BIF501 Assignment No.2 Solution Spring2020

BIF501 Assignment No.2 Solution Spring2020

 

Total Marks: 10                                                            Due Data: Aug 12, 2020                                                                                                  

Instructions:
Make sure that you upload the solution file before due date. No assignment will be acceptable through e-mail after the due date.
Formatting Guidelines
·        Use the font style “Times New Roman” and font size “12”.
·        Compose your document in MS-Word, any file created in any format will not be accepted and marked zero.
·        Use black and blue font colors only.
Solution Guidelines
·        To solve this assignment, you should have good command over Topics.
·        This is not a group assignment; it is an individual assignment so be careful and avoid     copying others’ work
·        Give the answer according to question only and avoid irrelevant details.
 Please note that your assignment will not be graded if:
·        If it is submitted after due date
·        The file you uploaded does not open
·        The file you uploaded is copied from someone else
·        It is in some format other than .doc
·        Cheating or copying of assignment from internet, ppt lessons or from each other is strictly prohibited. The cheated or copied assignment will be marked ‘Zero’.
·        Answers should be prĂ©cised and clear with no useless material.


Assignment Topic
Smith and Waterman Algorithm:
Q.1: Define Smith and waterman algorithm? Find the local alignment and alignment score of the following sequences by applying smith and waterman algorithm. (5)
NOTE: Proper construct a complete matrix with backtracking arrows.
Sequences:
1: ATGCGGTTATTGGAACCCTCAGTGACT
2: GCTAGTGACGTAGCGATAATGACG
Match Score: 1, Mismatch score: -1 and Gap score: 0
Needleman and Wunch Algorithm:
Q.2: Define Needleman and Wunch algorithm? Find the global alignment and alignment score of the following sequences by applying Needleman and Wunch algorithm. (5)
NOTE: Proper construct a complete matrix with backtracking arrows.
Sequences:
1: ATGCGATGACGTGA
2: TAGCGATAATGACG
Match Score: 1, Mismatch score: -1 and Gap score: 0

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